Rollup fences move after reboot

I've read through the forums and  I understand it's a problem when you have more than one monitor, but that is not the case here. I only have one monitor and whenever I reboot my system the fences move to where they are when they are rolled up. This only happens when I have the taskbar at the top of the screen using Start11. I found some old threads on reddit, but no solution. I have Fences 4 and Start11 on steam. 

Edit: This only happens when I restart or shutdown. If I put the PC into sleep mode it stays the same. If I turn off my monitor and wait to turn it back on for a minute or two when I start my PC they also stay in place, but the other programs that run on start move into weird positions. For example, usually the razer splash screen is dead center, but if I wait to turn on the monitor then it moves to the left and up.

I will post some screenshots in a few minutes to show what I mean, I just need to reboot my system.

Edit: This is how I have it set up.

And this is how it looks after a reboot.

All of the fences move up the where they would be when I have them rolled up. Any idea what to do?